PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010908511.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 383aa    MW: 44313.3 Da    PI: 5.3761
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010908511.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.2e-0691114226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     k  lC ff + G+C+ G +CkF+H+
  XP_010908511.1  91 KSILCEFFKA-GQCQKGFKCKFSHD 114
                     6679**7777.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.27289116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-689114IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-589115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-491115IPR000571Zinc finger, CCCH-type
SMARTSM003562.7161198IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.216161199IPR000571Zinc finger, CCCH-type
PfamPF165432.8E-17218301IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MPPKRQPSKA ELAKKQKVIE DKTFGLKNKN KSKNVQKYVQ SLQQTVQPKP DPSKITAKKK  60
KEEDKAREKE LNDLFKIAVS QPKVPVGVDP KSILCEFFKA GQCQKGFKCK FSHDLNVQRK  120
GEKIDLYSDK RDQPNETMED WDQETLEKVV ESKKKEYNQN KPTEIVCKYF LEAVERKQYG  180
WFWVCPNGGK DCHYRHALPP GYVLKSQMKA LLEEETEKIS IEEEIENQRA KTSTSTPLTP  240
ELFMQWKKKK MEEREAGLAV QRAERAKSDR MSGRELFLLD SSVFVDDAEA FDKYQREEES  300
DASEEVIIRL MVYHLLILLD VMKYEKVKNE NGAERPGTST SADKDVLDDD DVEELDIDEL  360
NELEASLSKT FIQIREPDIE ASS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010908511.10.0PREDICTED: zinc finger CCCH domain-containing protein 11-like isoform X1
SwissprotQ0JHZ20.0C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLW1NJV20.0W1NJV2_AMBTC; Uncharacterized protein
STRINGORGLA01G0297300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88592027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-155C3H family protein